File 2: Tooms - (Featuring… Squeeze, Tooms)

File 3: Abduction - (Featuring… Duane Berry, Ascension, One Breath)

File 4: Colony - (Featuring… Colony, End Game)

File 5: Master Plan - (Featuring… Talitha Cumi, Herrenvolk)

Special Edition: Piper Maru - (Featuring… Piper Maru, Apocrypha)

File 6: Tunguska - (Featuring… Tunguska, Terma)

File 7: 82517 - (Featuring… Nisei, 731)

File 8: Tempus Fugit - (Featuring… Tempus Fugit, Max)

File 9: Redux - (Featuring… Gethsemane, Redux, Redux II)

File 10: Emily - (Featuring: Christmas Carol, Emily)

File 11: Patient X - (Featuring… Patient X, The Red and the Black)

File 12: The End - (Featuring: The End, Interview - Inside The X-Files)