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Kokiri Forest
There is one behind the know-it-all-brothers house at night as a kid.
There is one behind the house of twins as an a adult at night.
In a bean hole put a bottle of bugs on it and it wll sprout a Skulltalla.
Hyrule Field
one near the gate to Hyrule castle
One is in the circle of stones near the entrance to Gerudo Valley
Hyrule Castle
There is a Skulltalla inside a crate inside the Guard House as a kid
Play the song of storms near the castle entrance to reveal a secret grotto that contains a Skulltalla as a kid.
There is a Skulltalla hiding in a tree near the entrance of Hyrule Castle as a kid.
As an Adult go to Ganons Castle and there is a Skulltalla behind a brick arch.
Lon Lon Ranch
There is a Skulltalla in a tree near the ranch's gate as a kid.
Behind the shed as a kid at night.
On the outer wall of the ranch NE from the shed as a kid at night.
There is a Skulltala on the second floor of Talons House as a kid at night.
Kakariko Village
(Note: every one is at night)
There is a Skulltalla in the tree near the village entrance as a kid.
There is one behind the house of Skulltalla as a kid.
There is one at the bulding that is under construction hiding under some bricks as a kid.
There is one at the outer wall of Kakariko Village near the boy who has nightmares house as a kid.
There is one on top of the lookout tower as a kid.
As an Adult there is one on the roof of Impas house.
Lost Woods
If you use a bottle of bugs on the bean hole near the skull kid a Skulltalla will pop out(as a kid).
As an Adult use the bean sprout that you planted as a kid and you will head up to a secret platform where there lies a Skulltalla (at night).
There is one in the bean hole near the shortcut to Zoras Domain as a kid (again with the bottle of bugs).
Death Mountain
When walking up the mountain the first cave on the right looks like it could use some bombing.....
In a small nook above the entrance to Dodongos Cavern as an adult at night.
After you weather the last of the falling rocks a Skulltalla will be waiting for you (as an Adult at night).
In a bean hole in front of Dodongos Cavern as a kid.
Goron City
There is one in a crae at the top level of goron city as a kid.
At night as an Adult there is one on the central platform.
Zoras River
As a kid at night there is one on a ladder.
As a kid at night there is one in the tree at the mouth of the river (if it does not work try it at day).
There is one on the wall near the center of the river at night as an Adult.
There is one on the wall near the entrance of Zoras Domain as an adult at night.
Zoras Domain
as an adult at night there is a Skulltalla on the frozen waterfall.
Zoras Fountain
In a tree in SE corner as a kid.
There is one next to a fallen log at night as a kid.
Inside a secret grotto near the Fairy's Fountain at night as an adult.
Lake Hylia
The same place you get the fire arrow as an adult (as a kid at night).
There is a Skulltalla in a crate at the bottom of the laboratorys pool (as an adult).
There is one behind the lakeside laboratory at night as a kid.
There is one in the tree on the mount above the water temple as an adult at night.
In a bean hole near the laboratory as a kid.
Graveyard
There is one on the Outer wall of the Graveyard as a kid at night.
There is one in the bean hole as a kid.
Sacred Forest Meadow
To the east of the stairs as an adult at night.
Death Mountain Crater
There is one in the bean hole as a kid.
Right near the entrance is a Skulltalla in a crate as a kid.
Gerudo Valley
a wall near the log bridge had a Skulltala (at night as a kid).
There is one near the Carpenters tent at night as a Adult.
There is a Skulltalla under a stone arch at night as an Adult.
There is one in the bean hole as a kid.
Gerudo Fortress
On the eastern wall of the fortress at night as an A dult.
There is one on the target pole on the archery range at night (as an Adult).
Haunted Wasteland
The stone shelter where as an adult you find the Poe guide there is one.
Desert Colossus
In a nearby palm tree at night as an Adult.
As an Adult take the magic bean platform you planted as a kid up to a platform where there is a Skulltalla (at night).
As a kid the bean hole has the last Skulltalla.