| Season Three |
| 3X01: Blessing Way | 3X13: Syzygy |
| 3X02: Paper Clip | 3X14: Grotesque |
| 3X03: D.P.O | 3X15: Piper Maru |
| 3X04: Clyde Bruckman's Final Repose | 3X16: Apocrypha |
| 3X05: The List | 3X17: Pusher |
| 3X06: 2Shy | 3X18: Teso Dos Bichos |
| 3X07: The Walk | 3X19: Hell Money |
| 3X08: Oubliette | 3X20: Jose Chung's From Outer Space |
| 3X09: Nisei | 3X21: Avatar |
| 3X10: 731 | 3X22: Quagmire |
| 3X11" Revelations | 3X23: Wetwired |
| 3X12: War of the Coprophages | 3X24: Talitha Cumi |
|
| Season Four | | 4X01: Herrenvolk | 4X13: Never Again |
| 4X02: Unruhe | 4X14: Leonard Betts |
| 4X03: Home | 4X15:Memento Mori | | 4X04: Teliko | 4X16: Unrequited | | 4X05: The Field Where I Died | 4X17: Tempus Fugit |
| 4X06: Sanguinarium | 4X18: Max | | 4X07: Musings of a Cigarette Smoking Man | 4X19: Synchrony | | 4X08: Paper Hearts | 4X20: Small Potatoes |
| 4X09: Tunguska | 4X21: Zero Sum |
| 4X10: Terma | 4X22:Elegy |
| 4X11: El Mundo Gira | 4X23: Demons |
| 4X12: Kaddish | 4X24: Gethsemane | |
