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Threads - Fw: Media Release on GM Crops Forum Convened By AIAST

On 14/6/2002, Podargus posted:

 Media release
  Issued June 19, 2003

Ag Science Institute tackles GM deadlock

New South Wales has out-capitulated Victoria on the genetic engineering  front, imposing a three-year moratorium on the release of genetically  modified (GM) food crops last week.

But what happens when GM-crops are eventually released? What will be the  consequences on the environment, farm productivity, trade and human  health?  A moratorium does not answer these fundamental questions.

According to the Australian Institute for Agricultural Science & Technology  (AIAST), the industry has reached a critical milestone and must now face  some tough decisions about the future of crop production in this country.

"As an industry and as a profession, we now face a real moment of truth,” said Turlough Guerin, president of the NSW branch of AIAST and convenor of a forum to be held in Sydney next month to debate the GM issue. Dr Guerin hopes the debate will help lead the industry out of the current deadlock. "Focused debate is urgently needed to communicate the genuine risks and rewards of this technology," he said. "We are the leading body of professionals in agriculture and natural resource management and are well placed to sponsor this debate in an open and objective way.”This process will also help identify where R&D funds are needed to fill the gaps in our knowledge of the risks," he said.

Dr Guerin said the GM-crop issue lay at the heart of agricultural sustainability because the potential flow-on effects would reach into many industries and communities, ultimately impacting on markets and export revenues. He said the forum would be titled "Release of Genetically Engineered Crops in NSW - What are the Human Health, Environmental, Commercial and Trade Issues?"

One of six speakers to be invited is Lindsay Cook, chief of NSW Agriculture’s Division of Plant Industries. Dr Cook will present the import of the recently passed NSW legislation titled Gene Technology (GM Crop Moratorium) Bill 2003.

TJ Higgins, assistant chief of CSIRO Plant Industry, will provide insights into the science behind the GM-crop debate. "Selective breeding by humans over thousands of years has led to improved  forages and crops and has given us most of the commercial crop varieties  we  use today," said Dr Higgins. "Traditional breeding, however, runs into some insurmountable hurdles and certain advances in plant improvement can only be made through gene technology.”Already, genetically modified plants have significantly reduced pesticide use in Australia," he said.

However, Dr Higgins also issued a caution: "As with all new technologies, there may be risks associated with gene technology. But testing, identifying and addressing the potential risks is helping to build confidence that the benefits of these technologies will outweigh any risk," he said.

A former head of Sydney University's plant breeding program, Don Marshall  of  Plant Breeding Solutions, also stresses the need for the assessment of  risks  from the flow of genes from genetically modified crops to the wider  environment. "Contamination of non GM-crops and plants from gene flow through pollen or seed is often cited as a major environmental risk posed by GM-crops," said Dr Marshall. "However, the potential risk of such contamination varies markedly between crops from virtually zero to 100%.”The factors that affect the probability of contamination include the size of the crop, its mating system, the nature of the commercial product and the propensity of the species to survive in feral populations."

Dr Marshall said there were issues to consider from the conventional crop grower’s perspective as well. "On the receptor side, some of the major factors affecting the risk of contamination include the size, distribution and proximity of non GM-crops, volunteer populations or related weeds and wild relatives.”  The potential for hybrid formation between the GM-crop and the recipient population - and their likelihood of survival in the cropping system - must also be assessed," he said.

Bruce Finney, central regional manager for Twynam Agricultural Group, will provide a grower's perspective. Twynam is one of Australia's largest producers of GM-crops and the group recognise that biotechnology is a valuable tool for improving the sustainability of farming. Mr Finney said the introduction of GM-cotton in Australia had been a real success story, bringing significant reductions in pesticide use. But the group also believe that genetically engineered traits need to be assessed on their individual merits, inferring that some GM-crops may not be acceptable. "Australia has a highly regarded regulatory system that assesses the risks of each proposed GM-crop to human health and the environment," he said. "By contrast, the ongoing debate on the release of GM canola has highlighted that we are yet to develop an equally effective process to manage the commercial risks.”Grower views need to be sought and their interests protected. Freedom to operate GM, conventional and organic production systems in co-existence must not be compromised by cost burdens and failures in risk assessment," he said.

Vice-president of the National Farmers Federation, Wayne Cornish, who is calling for balanced debate on the issue of growing GM-crops, will also speak. Mr Cornish has acknowledged there are potential benefits for Australian farmers through the integration of biotechnology within production systems. He believes GM-crops have the potential to reduce pesticide and herbicide use, increase water use efficiency, tolerate adverse growing conditions and improve yields. "While the adoption of GM-crops may result in more efficient production, it is important that producers understand and assess potential risks and implement strategies to manage these," he said. "It is also important that agricultural supply chains allow for all producers to continue meeting the requirements of their chosen markets.”  Farmers must be afforded choice in the method of production that best meets  their needs and allows them to meet market expectations," he said.

The forum will be held 2-6 pm on Monday July 14, 2003, at the Duxton Hotel, 88 Alfred Street, Milsons Point, NSW. At $70 per head, refreshments will be provided and delegates are invited to stay for drinks from 6:30 pm. To register contact Roger Fitzsimmons at aiastensw@optusnet.com.au.

Ray responded:

I'd like it noted, that my objection to any lack of caution in releasing herpes contraceptive has nothing to do with its genetically engineered source.

It's the viral nature of the problem, and our apparent history and current ignorance in knowledge of how to contain them.

Mass production of human proteins, and other biochemicals, by genetically engineered bacteria, we can live with as long as we can kill the bug, but virus gave us smallpox and HIV and SARS.

If no other argument, we're just not ready to take that kind of risk.

Rod Olsen replied:

Please do not jump up & down on this old bloke but - how is "engineering viruses" different from "engineering crops"?

As I understand it, the concern over GM Canola is that its seed would spread on the wind to farms that choose not to grow GM canola but the traditional variety.  IF this is a legitimate concern:
Please understand that we civilians have had some nasty experiences with unintended consequences with agricultural & related sciences (pesticide residues and their impact on humans, food animals, river systems, native fauna & flora).  Us oldies are not expert in all the science/technology involved, we just have some concerns which seem legitimate to us.

At the risk of being flamed, would you accept GM humans eg  introducing genetic material into developing human embryos to introduce "natural immunity" to diseases affecting humans, such as GM sickle cell anaemia to provide immunity against malaria as readily as you appear to accept GM food crops?

In case I have upset/annoyed some supporters of GM technology/science on this Forum, please remember that the old bloke you flame is somebody's granddad.

Ray answered:

Rod, plants can be controlled with fire, with weedkiller, with machette and flood (if you're so lucky).  Also you can see macro plants, you can't see virus without assistance.

No equivalent controls exists for too many virus.

The only treatment for virus like the common cold and herpes, is relief for the symptoms.

That is the difference.

Peter Macinnis responded:

> Please do not jump up & down on this old bloke but - how is "engineering
> viruses" different from "engineering crops"?

Possibly because qualified scientists could be concerned about risks from the virus, but few without an axe to grind would carry on about GM canola.  A scientific case could be made for the virus doing harm -- I am not saying it would be a feasible case, but one could be made, and it needs to be shown to be improbable. There IS a middle ground, and that is where we will end up.

> As I understand it, the concern over GM Canola is that its seed would spread
> on the wind to farms that choose not to grow GM canola but the traditional
> variety.  IF this is a legitimate concern:

No, it is more the spread of pollen than the spread of seed, though this is all a bit of a red herring.  The gene for Roundup resistance does not, in and of itself, make the GM canola nasty, and I am *fairly sure* the gene is not found in canola oil.  The usual bleat is about "genes in our food", as though there aren't genes in everying we eat.

The next effort is to call it "unnatural", when horizontal gene transfer happens all the time.

My beef with the loopy left is that they carry on like a regimented array of pork chops without knowing what they are talking about, and so deaden Joe Public to the issues that should cause concern.  They should spend more time studying, so they are able to point to REAL risks.

We have a budding biotechnologist in our house, and we were discussing methods over dinner last night -- he referred to the use of 'grass organisms' - 'grass' being GRAS, generally regarded as safe.  If you are modifying a lactobacillus to make better yoghurt, you cannot source genes from E. coli, you cannot even use an E. coli promoter -- the whole industry is based on being doubly safe. This was news to me, and I'll bet it would be news to most of the protesters.

> - given that genetic drift and other randomness comes into play, how certain
> are the GM proponents that there are no potential problems (yield,
> pest/disease susceptibility, etc) arising from GM & traditional crops mixing
> in the wild?

"Genetic drift" has a specific meaning, relating to random changes in gene frequencies.  I can't see how it is relevant here: can you amplify this a bit?

> I can appreciate the GM benefits from modified cotton but it is not a food
> crop - the risk to food crop productivity from unintended GM consequences is
> not an issue

Google "golden rice", which the loopies hate, because it only has benefits, is not owned by Big Agribusiness, and it saves lives.  they accuse the scientists of "cheating" by doing good, and say it is only done with malicious intent, in order to get GM accepted. They would rather see people starve (here, sadly, I have to agree with Dubya, though I doubt that we share many motives).

With no self-promotion intended, may I refer you to http://www.abc.net.au/rn/science/ockham/stories/s289416.htm where I
explore the way technologies advance?  GM is too new, and we have no way at all of knowing what the benefits of a new industry may be, and even less of guessing what the disadvantages will be. (With full self-promotion intended, I will bury here the note that a book called "Rockets: Sulfur Sputnik and Scramjets" is to be let loose on the world on July 11, and it also uses this question of how technologies mature and produce unexpected effects.)

> At the risk of being flamed, would you accept GM humans eg
>
> - introducing genetic material into developing human embryos to introduce
> "natural immunity" to diseases affecting humans, such as GM sickle cell
> anaemia to provide immunity against malaria

This is gene therapy, and yes, I would be inclined to do accept it in the long term -- but not just yet, as there have been a number of cases of unusual cancer associated with attempts to treat children with SCID (severe combined immunodeficiency disease) -- Google those names or Alain Fischer at the Necker Hospital. In this case, it may have been the carrier that was used -- last I saw, nobody was certain, but there were definite suspicions.

Be aware that SCID is not necessarily a fatal condition IF a perfect-match bone marrow transplant can be arranged, but finding a suitable donor may not be easy, and as many as 30% or 40% of victims die of the disease. On that basis, it was deemed appropriate to try, but once the cancer cases started to show, the trials around the world were stopped.

The whole matter is a slippery slope -- do we then modify a tennis player's genes to give him/her longer arms?  My long bones are two standard deviations shorter than they ought to be for my body size -- it is not dwarfism, but causes a few MINOR annoyances -- like having trouble reaching my toes. Should I get the arm and leg lengthening, but not the tennis player? Or should we modify trees to produce more cellulose and less lignin to generate 'greener' paper? Maybe we would be better concentrating on finding alternatives to paper?

> In case I have upset/annoyed some supporters of GM technology/science on
> this Forum, please remember that the old bloke you flame is somebody's
> granddad.

Speaking as one of the more rabid pro-GM advocates, the questions you raise should not provoke flaming, nor should an expressed opinion based on an ethical stance. In the end, people started shouting at Wolfie because he kept raising the same issues, even when they had been answered, a bit like the creationists.  If you raised the "tomato with fish genes" story, and were told that it never existed, and you kept asserting that it did, with no evidence, then people might get a bit frosty, rather than flaming you.

As I implied in the tennis-player example, at some point, we will need to draw a line in the sand, and that will come down to values and ethics.  Flaming is inapposite, but some of the disputation is bound to get a little heated, since logic and facts will not be relevant data.

Hopefully, by then the facts will be agreed and understood.  That agreement and understanding will not come from brutally beating down the questioners.

Toby Fiander responded:

>  I am *fairly sure* the gene is not found in canola oil.

The process is intended to collect oil, which has no genes.  However, no process is perfect and there is a minute amount of material that might be referred to as DNA in most edible oil.  It is even likely that the cheaper and nastier the product the less perfect the extraction process, but the amounts are probably still tiny.

There are issues about GM canola and multiple pesticide resistance, but they are probably relatively minor and not as represented in the article in the British papers this week, which has the same misunderstandings that they had 12 months ago.  Wolfie's characteristic, to ignore sound data-based argument because it did not fit his worldview, is widespread.

The Land newspaper this week (from its website) suggests that Australian producers are likely to reject GM canola, but this is almost certainly due to the marketing issues created by the very effective anti-information campaign run in Europe.  As a marketing decision, it probably has merit - the loss of yield from using only non-GM varieties is probably only 0.5t/ha and the market advantage could be considerable.

The gene for resistance to glyphosate-resistance is now found in half a dozen countries and in most of the major crops.  It is naturally occurring.  I am not sure that encouraging its propagation is responsible, but merely using glyphosate will do that.  It is irresponsible of the companies involved to say that there would be less herbicide used overall if you use their Roundup-ready variety, because this is not true in the long-term.  But the plain fact is that there is a battle between farmers and weeds, which has a genetic aspect to it and always has.  GM crops are just another tool.

As to the danger of GM oil crops, well... I am afraid as Australia has been importing about half of its edible oils for years, then most Australians have eaten significant quantities of GM oil... it is in nearly every manufactured food, it seems and the oil produced in the US has used GM varieties for several years.  There are a few manufactured foods that advertise that the oil from GM free crops, but I wonder if the effort is worthwhile.

Incidentally, Wolfie claims to have lost all interest in science since leaving the list, but there is an argument that he was never interested in SCIENCE in the first place.

Zero Sum wrote:

> > Please do not jump up & down on this old bloke but - how is
> > "engineering viruses" different from "engineering crops"?

> Possibly because qualified scientists could be concerned about risks
> from the virus, but few without an axe to grind would carry on about
> GM canola.  A scientific case could be made for the virus doing
> harm -- I am not saying it would be a feasible case, but one could be
> made, and it needs to be shown to be improbable. There IS a middle
> ground, and that is where we will end up.

With canola, that is probably fine, but with engineered viruses there is currently no middle ground.  Since we lack the technology to deal with viruses (it wasn't technology that beat SARS - iff beaten - but plain old fashioned medecine) in a safe and secure manner, we would be wiser to avoid any risks, even potential ones.

[snip]
> Google "golden rice", which the loopies hate, because it only has
> benefits, is not owned by Big Agribusiness, and it saves lives.  they
> accuse the scientists of "cheating" by doing good, and say it is only
> done with malicious intent, in order to get GM accepted. They would
> rather see people starve (here, sadly, I have to agree with Dubya,
> though I doubt that we share many motives).

Just a question...
If the genes for golden rice do get spread uncontrolably will we have to give up eating rice to avoid hypervitimanosis?  I'm not against it (golden rice) or GM in general.  I do think that we must take almost infinite pains with it as the consequences...

> With no self-promotion intended, may I refer you to
> http://www.abc.net.au/rn/science/ockham/stories/s289416.htm where I
> explore the way technologies advance?  GM is too new, and we have no
> way at all of knowing what the benefits of a new industry may be, and
> even less of guessing what the disadvantages will be. (With full
> self-promotion intended, I will bury here the note that a book called
> "Rockets: Sulfur Sputnik and Scramjets" is to be let loose on the
> world on July 11, and it also uses this question of how technologies
> mature and produce unexpected effects.)

Yes it is new, very new, and we have yet to learn what all the problems will be.  Even the use of asbestos was once new...

Our history contains a list of disasters caused by new technology (maybe the first was agriculture) and as our new technologies become more powerful it behooves us to take greater and greater care.

> > At the risk of being flamed, would you accept GM humans eg
> > - introducing genetic material into developing human embryos to
> > introduce "natural immunity" to diseases affecting humans, such as GM
> > sickle cell anaemia to provide immunity against malaria

> This is gene therapy, and yes, I would be inclined to do accept it in
> the long term -- but not just yet, as there have been a number of
> cases of unusual cancer associated with attempts to treat children
> with SCID (severe combined immunodeficiency disease) -- Google those
> names or Alain Fischer at the Necker Hospital. In this case, it may
> have been the carrier that was used -- last I saw, nobody was certain,
> but there were definite suspicions.
>
> Be aware that SCID is not necessarily a fatal condition IF a
> perfect-match bone marrow transplant can be arranged, but finding a
> suitable donor may not be easy, and as many as 30% or 40% of victims
> die of the disease. On that basis, it was deemed appropriate to try,
> but once the cancer cases started to show, the trials around the world
> were stopped.

Hang fire, this is a really bad example to use.  Sickle cell anaemia is either beneficient or otherwise depending on the environment.  Eliminating it or giving it to 100% of the population would decrease the viability (and adaptability) of our species, would it not?

> The whole matter is a slippery slope -- do we then modify a tennis
> player's genes to give him/her longer arms?

You don't.  There is no point.

> My long bones are two standard deviations shorter than they ought to be
> for my body size --

Have you been check for diabetes recently?  A shorter humerous (by only one standard deviation) is apparently a strong indicator for the development of type II diabetes.  Better get that checked out.

> it is not dwarfism, but causes a few MINOR annoyances -- like having
> trouble reaching my toes. Should I get the arm and leg lengthening,
> but not the tennis player? Or should we modify trees to produce more
> cellulose and less lignin to generate 'greener' paper? Maybe we would
> be better concentrating on finding alternatives to paper?

Since arm and leg length is not going to be know until close to maturity, there isn't much you can do about it in the adult organism.

With the paper, obviously the less energetic solution the better.

> > In case I have upset/annoyed some supporters of GM
> > technology/science on this Forum, please remember that the old bloke
> > you flame is somebody's granddad.

> Speaking as one of the more rabid pro-GM advocates, the questions you
> raise should not provoke flaming, nor should an expressed opinion
> based on an ethical stance. In the end, people started shouting at
> Wolfie because he kept raising the same issues, even when they had
> been answered, a bit like the creationists.  If you raised the "tomato
> with fish genes" story, and were told that it never existed, and you
> kept asserting that it did, with no evidence, then people might get a
> bit frosty, rather than flaming you.

I always thought that people were a little hard on Wolfie.  he lacked the experience in science to express his point properly and got repeatedly trashed for expressing it poorly.  The bottom line for Wolfie was that he didn't want risks taken on the say-so of people (scientists) who had repeatedly made blunders in the past.  That is quite rational as I see it.

He no longer trusts scientists.  Possibly with good reason.

There are some risks you do not take even when you are sure,simply because you may have made a mistake and the potential consequences of that mistake are to severe to be ignored.

Prince Charles has good reason to be worried about nanotech "grey goo".  Eventually we will be able to build such.  Only the insane would actually do so but we have plenty of them around (even running countries).

[snip]
> Hopefully, by then the facts will be agreed and understood.  That
> agreement and understanding will not come from brutally beating down
> the questioners.

The facts may be agreed and understood but the risks are always an opinion, as are the magnitude of the consequences.  Some people may consider that a one in ten billon chance of wiping our species out is just fine.  Others won't.

Peter Macinnis responded:

> With canola, that is probably fine, but with engineered viruses there is
> currently no middle ground.  Since we lack the technology to deal with
> viruses (it wasn't technology that beat SARS - iff beaten - but plain old
> fashioned medecine) in a safe and secure manner, we would be wiser to
> avoid any risks, even potential ones.

yes -- I meant a middle ground between the virus on one side and GM stuff on the other.  The most effective SARS treatment, at cost to the medical staff involved, was that undertaken in Vietnam, where they nailed it down and splatted it in isolation.

> Just a question...
> If the genes for golden rice do get spread uncontrolably will we have to
> give up eating rice to avoid hypervitimanosis?  I'm not against it (golden
> rice) or GM in general.  I do think that we must take almost infinite
> pains with it as the consequences...

From memory, the makers took that into account -- not with wild spread of many genes (unlikely), but people consuming too much rice. Golden rice makes only the precursors of vitamin A, so no probs -- as I recall it.

> Yes it is new, very new, and we have yet to learn what all the problems
> will be.  Even the use of asbestos was once new...

If we knew how many people cars would kill, would we allow them if they were proposed?

> Hang fire, this is a really bad example to use.  Sickle cell anaemia is
> either beneficient or otherwise depending on the environment. Eliminating
> it or giving it to 100% of the population would decrease the viability
> (and adaptability) of our species, would it not?

That is why SCID was a good example to use.  Have we the right to say "No, sorry, we need you as a parking spot for genes that are bad for you, but MIGHT be needed later?" that is where you come to casuistry, sophistry, and all the other value-laden arguments.  Your question will need to be asked, though.

> > My long bones are two standard deviations shorter than they ought to be
> > for my body size --

> Have you been check for diabetes recently?  A shorter humerous (by only one
> standard deviation) is apparently a strong indicator for the development
> of type II diabetes.  Better get that checked out.

There is a family history of diabetes, but mine appears to be environmental rather than genetic -- I was a wartime baby, subjected to gin, nicotine and other undesirable items, which may have something to do with it.

> Prince Charles has good reason to be worried about nanotech "grey goo".

Perhaps because his head is already full of it?  I don't accept that a dysfunctional inbred pampered upper-class twit with no qualifications has a valid role here.


Zero Sum replied:

On Wed, 25 Jun 2003 10:58, Peter Macinnis wrote:

> > Prince Charles has good reason to be worried about nanotech "grey
> > goo".

> Perhaps because his head is already full of it?  I don't accept that a
> dysfunctional inbred pampered upper-class twit with no qualifications
> has a valid role here.

Grr...  You snipped the "why"...

If you have a disinclination for pampered upper-class twits, then you must have contempt for a lot of histories scientists.  Ad hominem does not cut it.

and :

On Wed, 25 Jun 2003 11:13, Podargus wrote:
> It can be equally argued that the fact that you have reached your
> advanced age in good health, and a with a great standard of living, is
> the result of these 'nasty experiences.  What bit do you eschew?

The bit that our children and grandchildren will have to (or fail to) endure.

Peter Macinnis added:

Lunchtime, and this just in form Guy Nolch at "Australasian Science":

GM Benefits Don¹t Outweigh Risks: Survey of Canola Farmers

A survey of canola farmers has found that they do not support genetic modification of the crop. Published in the July issue of Australasian Science magazine, the survey found that genetic modification of agricultural produce was only supported if it ³demonstrated specific agricultural benefits, such as resistance to fungal disease².

In contrast, ³canola modified to be herbicide-tolerant was considered unacceptable by a majority of respondents regardless of its potential benefits. A majority of respondents (70%) felt that the benefits of herbicide-tolerant GM canola did not outweigh the risks, and were not willing to support it.²

The survey was conducted by Anne Parkinson, a PhD student at La Trobe University¹s School of Social Sciences, and Dr Richard Hindmarsh of Griffith University¹s Australian School of Environmental Sciences.

They write: ³The survey is unusual because the traditional focus on GM opinions has been on consumers, not producers. Yet, producers occupy a crucial position in the marketing of GM crops ­ if they¹re not willing to grow GM crops then GM crops will not be sent to market unless GM corporations pursue direct farming, which seems highly unlikely.²

Parkinson and Hindmarsh write that ³canola farmers do not support growing GM canola for three main reasons:
Parkinson and Hindmarsh say their findings ³align with the concerns of many farmers¹ organisations. With Tasmania, Western Australia and NSW placing moratoriums on the commercial release of GM food crops, and Victoria recently placing a 1-year moratorium specifically on GM canola, the findings of the survey thus appear significant and to be in accordance with current trends.²

Please cite AUSTRALASIAN SCIENCE MAGAZINE as the source of this story.


Podargus posted, in reply to a previous post by Peter Macinnis:

> We have a budding biotechnologist in our house, and we were discussing
> methods over dinner last night -- he referred to the use of 'grass
> organisms' - 'grass' being GRAS, generally regarded as safe.  If you
> are modifying a lactobacillus to make better yoghurt, you cannot
> source genes from E. coli, you cannot even use an E. coli promoter --
> the whole industry is based on being doubly safe. This was news to me,
> and I'll bet it would be news to most of the protesters.

The use of modified lactobacillus for yoghurt was news to me until I did some research for an article on GMOs.  The implication was that all/most yoghurt used it, I didn't need to look deeply into it at the time, do you or your colleague know how widespread the use is?

Peter replied:

>The use of modified lactobacillus for yoghurt was news to me until I did
>some research for an article on GMOs.  The implication was that all/most
>yoghurt used it, I didn't need to look deeply into it at the time, do you or
>your colleague know how widespread the use is?

Well I got it wrong -- it was Lactococcus, not Lactobacillus, and apparently the work is being done by DMM at Moorebank -- happy Googling!

Duncan is not sure how common the GM versions are.

Jason Chantarat posted:

How do you stop the wind blowing the GM seed into areas where it is not wanted by traditional farmers?

Hi everyone

This is a rather naive comment coming from my view on GM crops.
"Why not just 'genetically modify' the crops so they won't blow with the wind...
quite simple really..."

Peter Macinnis replied:

Not naive, fresh -- and since when was naive, unblinkered thinking bad in any case?  Funnily enough, I learned this week that it is possible that there may be a solution.  It is all rather complex, but it involves inteins, where one half of the required gene is in the chloroplast, which does not travel with the pollen -- like mitochondria coming from Mum, chloroplasts also come from the ovum only.  The pollen can never transfer the gene.

I started reading up on this last night, and planned to master the methodology of this technology and pass my account to the list
sometime next week -- if anybody knows much and weighs in early, that may save me some brain frazzling.  It is another neat bit of work my son has passed on to me.

The intein route also makes transfer by any of the other lateral transfer routes less likely as well.

More when I know enough of what I am talking about.  The stuff in "Nature" is bad news, there is some easier stuff in "Science".

and:

At 16:08 26/06/03 +1000, I wrote:

>Funnily enough, I learned this week that it is possible
>that there may be a solution.  It is all rather complex, but it
>involves inteins, where one half of the required gene is in the

<snip>

>I started reading up on this last night, and planned to master the
>methodology of this technology and pass my account to the list
>sometime next week

Well, next week came a little early.  I am still a bit shaky on this, so any expert advice on how to clarify matters will be welcome, and I can only undertake to answer questions as well as I can.  This should give readers the general idea -- and it is certainly easier to read than the stuff I have ploughed through today.  My thanks to my son, Duncan, who filled me in, trained me up, and turned me loose.

I would also welcome any helpful Web resources.

******************

TECHNICAL: skip over this if you wish, and come back later.

Inteins occur primarily in yeast, algae, viruses, bacteria, and archaea, and they are pieces of protein that break free when the section of protein on the carboxyl end of the intein, the so-called C-extein, grabs onto its N-extein counterpart and tears it off the  intervening intein, attaching it to itself. The intein then cuts itself loose from the newly connected exteins. The reaction is spontaneous, occurring as soon as a protein  folds.

The first intein was discovered in 1987 (or 1990, depending on who tells the tale), and a search on the Web reveals remarkably little helpful information about the inteins. A good technical reference of about 20 pages: www.sp.uconn.edu/~gogarten/bioinf/InteinReview.pdf, where one can read:

"Inteins (internal proteins) are genetic elements similar to self-splicing introns; however, inteins are transcribed and translated together with their host protein. [Introns are not transcribed.] Only at the protein level do the inteins excise themselves from the host protein. The two portions of the host protein separated by the intein are called exteins (external proteins). . . . During the splicing process the intein is excised, the two exteins are joined by a peptide bond, and the host protein assumes its normal folding and function."

There is a technical database at www.neb.com/neb/inteins.html , and Francine Perler and Ming Xu are two of the leading researchers, so their names may be worth Googling. A brief paper in 'Science' for June 13 by Ingrid Wickelgren is worth accessing.  Volume 300, Number 5626, Issue of 13 Jun 2003, pp. 1646-1649.  She has a bit more on the PNAS paper cited below.


GENERAL

Let us turn now, a little eccentrically, with the notion of an intron, often referred to as 'junk DNA', sections of DNA that are spliced out when DNA is being transcribed to RNA. When similar pieces of 'junk protein' were discovered, it seems they were dubbed "inteins". We can ignore the introns now, as their only role here is in providing a name. We cannot, however, ignore the inteins.

Inteins are pieces that are attached to two component sections of protein that need to be linked together to make a working protein. The two proteins may be specified on nuclear DNA, chloroplast DNA or mitochondrial DNA. If they come from different parts of the cell, they are referred to as 'split inteins', and it is these split inteins that we need to look at most closely.

The important thing to note is that the two halves of the protein do not need to be coded for in the same place: they have no problem with being split inteins. They can come from different chromosomes, or one may come from a chromosome while the other comes from DNA located, for example, in the chloroplast. When the two halves come together, the 'junk' parts line
up against each other, and also align the active parts, so when the 'junk' pieces break off and drift away, a new protein is left behind, ready to play a role in the cell.

Now keep in mind that just about everything happening in the cell is under the control and direction of proteins. If a plant is to be herbicide-resistant, or to make a vitamin, a special protein needs to be made, an enzyme that has just the right shape, size, and charge distribution to control a reaction. The protein is made of a string of amino acids, a polypeptide, that folds up in just the right way, so as to make the proper shape. When the intein portions are clipped off, two remnants remain which can fold up into just the right shape, delivering a new enzyme.

Now we need to consider the nature of pollen grains and sperm cells. Sexual reproduction is an effective basis for evolution because it produces reasonable numbers of offspring, and gives them all a freshly shuffled set of genes to work with, so as to bring about new combinations faster. Over time, evolution has favoured those organisms which develop a large cell, the ovum, loaded with extra food and other useful bits and pieces, and stripped-down sperm and pollen cells, carrying half the standard number of chromosomes only.

Most of the sperm cells and pollen cells are destined to be wasted, and they are produced in amazing profusion. If they were larger, they would travel more slowly, and all the 'extras' would be wasted in almost every case. It gives a better advantage for organisms to produce male sex cells, pollen and sperm, with a bare minimum load to carry. The extra bits that our cells need come from the ovum.

Most biologists now accept serial endosymbiosis theory, which suggests that our complicated cells arose from several components, so that the presence of genes in the chloroplasts of plants and in mitochondria is easily explained: these were once independent organisms that fused together to form a stronger unit. The process of sexual reproduction may well have evolved before our ancestors added in the new residents, but they got around it by ensuring that the residents always travelled with the ovum.

A major concern with genetically modified organisms has long been that pollen grains can travel long distances with insects or on the wind, and carry GM genes with them, causing what opponents of GM love to call 'contamination'. They then go on to argue that herbicide-resistant canola, for example, produces contaminated canola oil, which is somehow unclean and perverted. This is, of course, entirely without a sound basis, and goes to show how the opponents of GM, in their ignorance, take no notice of the REAL concern that they should be expressing.

Many crops are closely related to plants that we now regard as weeds, and plants have much weaker barriers to the interchange of genes from one species to another. It would be a serious problem if those weeds were to acquire herbicide-resistance from crops, and that is a likely situation if pollen just blows around anywhere, carrying the genes with it.  'Contaminated' crops are not the problem, but weed-resistant weeds ARE.  Of course, as far back as 1997, the weed rye grass had evolved a natural
resistance to glyphosate (or 'Roundup'), so the herbicide will eventually cease to be of use against weeds, but it would be nice to keep using glyphosate for as long as possible, since herbicide farming is far more soil-friendly than conventional tilling, but it relies on having crops that are unaffected and weeds that are affected.

So there is a good and valid scientific reason to limit the spread of GM genes. Added to that, there is a good political reason to do so, because it will stop the protesters from carrying on about their precious 'contamination'. At the very least, this might release their minds to look again, and identify genuine problems with GM methodology. Science is not above being questioned, but right now, it is not being questioned, just slandered, because those who should be questioning know no better.

Now we need to turn back to the inteins, and why they are of interest here: if a split intein that delivers herbicide resistance can be engineered so that one half is in a chloroplast, and the other half is in the nucleus, the likelihood of a whole resistance gene ever being delivered becomes vanishingly small, on a par with being hit simultaneously by two asteroids from two different directions. Even if the entire chloroplast half of the gene were to be transferred to a host plant, it would need to get into the tiny number of cells that become ova, and it would need to be fertilised by a pollen grain carrying the other half.

I originally wrote that as yet, this is merely a theoretical hope, but the potential is there for some remarkably clever work.  Now I find that Sriharsa Pradhan's team at New England Biolabs (where most of the best work is going on -- they mainatin the database cited above) has already conferred herbicide resistance on tobacco plants. They attached one of two parts of an algal intein to each half of  a herbicide-resistant gene, they report in the 15 April Proceedings of the National Academy of Sciences. One fragment went into the chloroplast genome, the  other into the nucleus. The intein-containing fragments reassembled in the chloroplast and spliced to yield an intact protein that protected the plant.

**************

Well, you can guess which encyclopedia is going to be the first on the block with this topic.  Happy reading!

Chris Forbes-Ewan wrote:

Going over old mail, to discard it or place it in folders as appropriate, I came across the following question from Zero Sum (Sent: Wednesday, June 25, 2003 10:41 AM)

> If the genes for golden rice do get spread uncontrolably will we
> have to give up eating rice to avoid hypervitimanosis?

The unequivocal answer to this question is 'no!'

Golden rice provides beta-carotene, also known as provitamin A. The body regulates the conversion of carotene to vitamin A according to its vitamin A status--if you are deficient in vitamin A, carotene will be converted to the active vitamin at the maximum rate. If you already have adequate vitamin A, the conversion rate is reduced accordingly. So hypervitaminosis A will never occur as a result of eating Golden Rice.

Zero's message also contained:

> Our history contains a list of disasters caused by new technology
> (maybe the first was agriculture) ...

Our history also contains a lot of successes due to technology (maybe the *first* was agriculture).

> A shorter humerus (by only one standard deviation) is apparently
> a strong indicator for the development of type II diabetes.

Do you have a reference for this? The only anthropometric variable associated with type 2 diabetes that I know of is obesity (and the association is very strong in this case).

David Allen added:

But, this brings to mind the extensive and now well publicised study of a decade or so ago; curtailed due to some adverse reactions detected as a result of imbibing beta-carotene in isolation from other phytochemicals normally accompanying it in nature, it is suspected.
 
I wonder if these other phytochemicals which appear to be synergistic with b-c are present in appropriate quantities in 'Golden Rice'? It seems unlikely as, as far as I know, such chemicals and their synergies have not even been identified.

........."Conflicting results on beta carotene point out the need for many studies before epidemiologists and other specialists can recommend dietary supplements to reduce cancer risk. By looking at people's diets and comparing cancer rates among different ethnic and geographic populations, epidemiologists are working to get clues that may help identify cancer inhibitors and, thus, further refine dietary recommendations. Because large population studies are never exactly the same -there may be a different
population group, different cancers, or a different combination of food and nutrients - public health specialists look at the total body of evidence before drawing conclusions.
"...........
http://www.biorap.org/rg/rgcancerdietfact.html

http://www.diabetesselfmanagement.com/article.cfm?aid=978&sid=6

refer, amongst others.

Zero Sum replying to Chris Forbes-Ewan:

> Our history also contains a lot of successes due to technology (maybe
> the *first* was agriculture).

You know I am not an anti-technologist.  I'm merley pointing out that it is a two edged sword (as are all things).

> > A shorter humerous (by only one standard deviation) is apparently
> > a strong indicator for the development of type II diabetes.

> Do you have a reference for this? The only anthropometric variable
> associated with type 2 diabetes that I know of is obesity (and the
> association is very strong in this case).

Unfortunately, no.  It was something I came across in my reading into diabetes to discover what I need to know.  It is on the web somewhere. As an aside, it fits perfectly with my family (both sides).

Chris Forbes-Ewan wrote, in response to David Allen's comment:

We're getting away from the point of Zero's question, which was along the lines of what would happen if the gene for beta-carotene in Golden Rice were to somehow spread through all varieties of rice.

In the very unlikely event that this did happen, the point I was making is that hypervitaminosis A (i.e. toxicity due to excessive vitamin A ingestion) will not be a problem.

David's point about high levels of supplementary beta-carotene being associated with increased cancer risk is valid, but not relevant to this discussion. Golden Rice will not provide a high level of beta-carotene intake. In fact, one of the criticisms by the anti-GM lobby is that Golden Rice is a relatively poor source of vitamin A (or rather of beta-carotene, the most common form of pro-vitamin A).

The Australian Recommended Daily Intake of vitamin A is 750 micrograms per day for adults. Golden Rice provides about 2 micrograms of beta-carotene per gram of rice. The conversion rate of beta-carotene to vitamin A is not known exactly, but estimates range from 1:6 to 1:12 (i.e. between 6 and 12 micrograms of beta-carotene are required to produce 1 microgram of vitamin A).

Eating 200 grams (before cooking)--a large quantity by western standards--of Golden Rice would provide you with about 400 micrograms of beta-carotene, which is the equivalent of (at most) ~70 micrograms of vitamin A. This is about 10% of the recommended daily intake. It is enough to make a difference if you are vitamin A deficient (as hundreds of millions are in developing countries), but it is nowhere near enough to be toxic.