Marvel US

Beginnings (1-6)
New Order (7-12)
Cybertron Redux (13-18)
Showdown (19-24)
Breakdown (25-30)
Treason (31-32, 35-37)
Trail by Fire (Headmasters 1-4, 38-39)
Maximum Force (40-42, 44-45)
Dark Star (46-50)
Last Stand (51-55)
Primal Scream (Hardcover) (57-62)
Matrix Quest (63-68)
All Fall Down (69-74)
End of the Road (75-80)
Dark Designs (G2 1-6)
Rage in Heaven (7-12)

Marvel UK

Target 2006 (79-88)
Fallen Angel (101-102, 113-120)
Legacy of Unicron (133-134, 137, 146-152)
Space Pirates (160-161, 172-173, 182-187)
Time Wars (130-131, 189, 199-205)
City of Fear (132, 164-171, 188)
Dinobot Hunt (45-50, 74-77)
Prey (96-100, 103-104, 135-136, Annual)
Second Generation (59-65, 93, 145, 198)
Aspects of Evil (223-227, 251-254, 235-236, 240, 245-247)
Way of the Warrior (219-222, 229, 237-239, 272-274, 282-283, 249-250)
Fallen Star
Earthforce
Perchance to Dream (Coming Soon)

Dreamwave

The War Within Volume 1 (Preview, 1-6)
The War Within Volume 2 The Dark Ages (1-6)
More Than Meets The Eye Volume 1 (1-4)
More Than Meets The Eye Volume 2 (5-8)

TV Magazine Manga Complete Collection