DANA

Mulder, I feel the same way about Skinner as you do...
- Avatar

SCULLY: (voiceover) If my work with Agent Mulder has tested the foundation of my beliefs, science has been and continues to be my guiding light. Now I'm again relying on its familiar and systematic methods to arrive at a truth, a fact that might explain the fate that has befallen me. An investigation that began without, now turning within... If science serves me to these ends... it is not lost on me that the tool which I've come to depend on absolutely cannot save or protect me... but only bring into focus the darkness that lies ahead.
Redux

"Then you were frozen, and I remember I hugged you until you were not frozen anymore."
-Alone (this has got to be one of my favorite Scully quotes of all time!)

"And in an instant, I realized that it's what Mulder would have seen, or understood.  Because that's just how he came at things; without judgement and without prejudice, and with an open mind that I am just not capable of."
-Badlaa

"I can't take you anywhere."
- Clyde Bruckman's Final Repose

"Don't worry, Mulder -- some day your psychic will come."
-from the original script of Clyde Bruckman's Final Repose

"The truth may hurt, but it's all that matters."
- Dead Alive

"Yeah, I've already seen what you get with tears and a sad story."
- Deep Throat

 "Have you let Skinner in on this?"
-Dod Kalm

" I guess I never realized how much I rely on him before this ... his passion ... he's been a great source of strength that I've drawn on."
-Elegy

"He's worth the effort, Mulder."
- Empedocles

"Nice package."
- Empedocles

"Just give it to the man with the funny look on his face."
- Empedocles

"Any vibrations, Agent Reyes?"
-Existence

"William...after your father."
-Existence (never mind that it's her father's name too...and her brother's...and Fox's middle name...)

"Mulder, you just keep unfolding like a flower."
- Fire

"I'm going to put a stop to this."
-4D

"You're not going to tell me when your love affair with Patterson ended?"
-Grotesque

"Keep that up, Mulder, and I'll hurt you like that beast-woman!"
-The Jersey Devil

"He's a jerk!"
-The Jersey Devil

"Mulder can't know."
-Nothing Important Happened Today II

"He's gone. He's just gone."
-Nothing Important Happened Today

"It makes sense in its own way."
-Nothing Important Happened Today

"Well...I guess I'm done here. You seem to have invalidated your own work. Have a nice life."
-Patient X

"I'm working with someone. But believe me, he's nobody you need to worry about. His name is Fox Mulder."
-from the original script of Pilot

"Mulder, Skinner is dirty.  He's not your friend."
 Redux II

"Unless you bring me spanky, there's nothing I can do."
Scary Monsters

"Nonsensical repetitve behaviour is a common trait of mental illness."
-Soft Light

"THIS IS NOT HAPPENING!"
-This Is Not Happening

"He's right. You're right."
- Three Words

"Shut up, Mulder. I'm playing baseball."
-The Unnatural

"Smart is sexy."
- War of the Coprophages